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Bill Hooker, member since Jan 4, 2006
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growth in web technologies and increased transparency in the literature - and data - may be contributing to a shift in our perceptions of what constitutes a prior publication. Innovative online journals with virtually unlimited space provide researchers with opportunities to produce novel (original) contributions to the literature that are clearly and transparently linked to previously published articles. These include significantly extended/re-analysed reports of previously published summary findings in journals such as Trials and legitimate or incremental updates to previous studies in BMC Research Notes.
by sennoma 2009-11-27 20:06 science · openscience · scholarlycommunication
http://blogs.openaccesscentral.com/blogs/bmcblog/entry/what_is_original_research - cached - mail it - history
by sennoma 2009-11-27 13:17 walterjessen · oaos.examples · interviews · openscience
http://www.walterjessen.com/promoting-open-source-science - cached - mail it - history
by sennoma 2009-11-27 12:51 oaos.blogs · openscience
http://bukvova.wordpress.com/2009/11/27/open-research-open-science - cached - mail it - history
by sennoma 2009-11-27 12:47 oaos.misc · openscience · citizenscience
http://robertpaterson.posterous.com/science-20-the-birth-of-the-citizen-scientist - cached - mail it - history
This report has attempted to draw together and synthesise evidence and opinion associated with data-intensive open science from a wide range of sources. The potential impact of data-intensive open science on research practice and research outcomes, is both substantive and far-reaching. There are implications for funding organisations, for research and information communities and for higher education institutions.
by sennoma 2009-11-24 23:47 oaos.review · opennotebookscience · openresearch · openscience
http://www.jisc.ac.uk/publications/documents/opensciencerpt.aspx - cached - mail it - history
Increasingly, scientific breakthroughs will be powered by advanced computing capabilities that help researchers manipulate and explore massive datasets. The speed at which any given scientific discipline advances will depend on how well its researchers collaborate with one another, and with technologists, in areas of eScience such as databases, workflow management, visualization, and cloud computing technologies. In The Fourth Paradigm: Data-Intensive Scientific Discovery, the collection of essays expands on the vision of pioneering computer scientist Jim Gray for a new, fourth paradigm of discovery based on data-intensive science and offers insights into how it can be fully realized.
by sennoma 2009-10-24 12:08 opendata · openscience
http://research.microsoft.com/en-us/collaboration/fourthparadigm - cached - mail it - history
SciencePipes is an environment in which students, educators, citizens, resource managers, and scientists can create and share analyses and visualizations of biodiversity data. It is built to support inquiry-based learning, allowing analysis results and visualizations to be dynamically incorporated into web sites (e.g. blogs) for dissemination and consumption beyond SciencePipes.org itself. For more information: * further introduction * presentations * status of the site * NSDL article about SciencePipes.org Alpha functionality demos: * uploading and running a Kepler workflow * editing a pipe in the SciencePipes.org authoring environment SciencePipes is a project of the Cornell Lab of Ornithology Information Science Program and is funded by the National Science Digital Library.
by sennoma 2009-10-06 01:05 scholarlycommunication · openscience · webtools
http://sciencepipes.org/alpha/home - cached - mail it - history
by sennoma 2009-09-27 20:23 opendata · openscience · scienceisasnakepit · scholarlycommunication
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007078 - cached - mail it - history
The benefits of community participation or collaboration should outweigh the costs to support a rational decision to pursue such routes. Lions usually prefer to hunt as a group as the shared food from group kills offers a better return and lower risk than hunting alone; in a similar manner organisations may also choose to collaborate to have greater success in acquiring new resources or income. The current convergence of a number of factors appears to be driving up the R&D collaboration benefit/cost ratio. The drivers include: 1. Scientific research is becoming more complex and multi-disciplinary, requiring researchers to move more away from “working in the expert’s box”. 2. Our work, economy and society are becoming more knowledge-oriented. (I define knowledge here as including understanding gained from experience and involves individual and collective knowledge in addition to explicit knowledge such as intellectual property (IP).) 3. Business models in the chemistry and pharmaceutical industry that worked fine historically, e.g., manufacturing products based predominantly on patents related to chemistry, appear to be increasingly lacking. 4. The goals of translational and personalized medicine have stronger requirements for networked and collaborative approaches over discipline and time than the historically relatively linear drug discovery and development process. Integrated services offer greater future value creation than stand-alone products. 5. Patient Safety has become an issue of growing concern requiring new more integrative approaches to data, knowledge and disciplines. 6. Computational Science continues to grow in importance, fueling overlaps and interactions between scientific disciplines including that of computer science. 7. The maturing of the Internet-based World Wide Web including enhanced usability, services, social software and the semantic web, provide new community and collaboration resource opportunities. 8. Challenging problems we face as a
by sennoma 2009-09-12 10:21 openscience · collaboration
http://barryhardy.blogs.com/theferryman/2009/06/growing-significance-of-communities-and-collaboration-in-discovery-and-d... - cached - mail it - history
Sharing data is good. But sharing your own data? That can get complicated. As two research communities who held meetings in May on the issue report their proposals to promote data sharing in biology, a special issue of Nature examines the cultural and technical hurdles that can get in the way of good intentions.
by sennoma 2009-09-10 01:39 opendata · openscience
http://www.nature.com/news/specials/datasharing/index.html - cached - mail it - history
by sennoma 2009-08-01 18:28 openscience · oaos.definitions
http://www.openscience.org/blog/?p=269 - cached - mail it - history
An "Aha!" moment or event indicates a change in the cognitive state. I first heard about this concept from Frank Ohl and Henning Scheich, former colleagues, but recently also found it in the Wall Street Journal: A Wandering Mind Heads Straight Toward Insight, which serves as a better introduction. These moments need an environment in which they can flourish. As far as my moments are concerned, they come—surprisingly—reliably but only if I write about my work with the reader in mind. Most of my articles changed quite dramatically in the process of writing, although I used to start writing, only when I thought the creative work is seemingly finished. I learned nothing could be more wrong. So for me being engaged in making my work more transparent by writing about it at an earlier stage, while it is still in progress, is nothing less than forcing insight.
by sennoma 2009-07-13 20:17 oaos.examples · openscience
http://mdlabblog.blogspot.com/2009/06/open-scientists-have-more-and-more.html - cached - mail it - history
by sennoma 2009-07-12 20:37 openscience
http://www.sciencegarden.de/content/2009-02/oeffentliche-wissenschaft-eine-bastelanleitung - cached - mail it - history
The Science Collaboration Framework (SCF) is a software toolkit to establish web-based virtual team organizations for researchers in biomedicine. It enables researchers to publish and discuss on-line content such as articles, news, and perspectives, and to provide shared semantic context for this content using established scientific vocabularies and automated text mining.
by sennoma 2009-06-23 01:44 opendata · openscience · collaboration · semanticweb
http://sciencecollaboration.org - cached - mail it - history
Science Comment is dedicated to the advancement of sciences. Feel free to add your comment on publications, be it inspiring thoughts or critics, to propulse the scientific discussion and to enhance future results. Please use this site to help clarify certain aspects of science. Let's make a difference!
by sennoma 2009-06-15 23:59 peerreview · openscience · open.commentary
http://www.sciencecomment.com/index - cached - mail it - history
Access to scholarly information in the disciplines of education and medicine occurred primarily through the simultaneous development of two bibliographic databases. The Education Resource Information Center (ERIC) originated as a resource designed to be comprehensive in its inclusion of peer-reviewed and unpublished literature for the entire education community. MEDLINE began as a resource of selective materials for physicians and researchers. Today, ERIC includes selected peer-reviewed literature directed primarily to researchers and practitioners, although others use the database, while MEDLINE is a vast information system serving all health professionals and consumers. This literature analysis of their policy history shows important differences in their evolution.
by sennoma 2009-06-15 23:06 openscience · scholarlycommunication
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6W4G-4W38706-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&vie... - cached - mail it - history
"Hi, welcome to my Blog. I’m Simon Coles, co-founder and CTO of Amphora Research Systems, and this is just a simple blog of stuff related to Electronic Lab Notebooks and anything else that comes to mind. I’ve been doing ELNs for over 13 years now, and have experience of a wide variety of ELN implementations, so I hope there will be something here for everyone."
by sennoma 2009-06-09 16:57 ELN · openscience
http://elnblog.com/about - cached - mail it - history
by sennoma 2009-06-04 15:14 openscience · import090501
http://sciencecommons.org/weblog/archives/2008/08/22/whats-open-science - cached - mail it - history
So how do you deal with competitors, people who want you to fail, in an open, transparent, and collaborative system
by sennoma 2009-05-31 00:33 collaboration · jimgilliam · openscience · open.govt
http://www.jimgilliam.com/2009/05/how-do-you-deal-with-competitors-in-open-systems - cached - mail it - history
# We should create an open central repository location at which authors can release software and documentation. # Software release should be an integral and funded part of projects. # Software release should become an integral part of the publication process. # The barriers to publication of methods and descriptive papers should be lower. # Programming, statistics and data analysis should be an integral part of the curriculum. # There should be more opportunities to fund grass-roots software projects of use to the wider community. # We should develop institutional support for science programs that attract and support talented scientists who generate software for public release.
by sennoma 2009-05-26 13:55 opendata · openscience
http://www.openscience.org/blog/?p=270 - cached - mail it - history
Experimental processes in the life sciences are becoming increasingly complex. As a result, recording, archiving and sharing descriptions of these processes and of the results of experiments is becoming ever more challenging. However, validation of results, sharing of best practice and integrated analysis all require systematic description of experiments at carefully determined levels of detail. The present paper discusses issues associated with the management of experimental data in the life sciences, including: the different tasks that experimental data and metadata can support, the role of standards in informing data sharing and archiving, and the development of effective databases and tools, building on these standards.
by sennoma 2009-05-18 10:56 opendata · openscience · collaboration
http://www.biochemsoctrans.org/bst/036/bst0360033.htm - cached - mail it - history
Topics covered include: * What is Web 2.0? * Web 1.0 and scholarly communication * Web 2.0 and Open Access * Blogs * Social bookmarking * Social networking * Podcasts * Wikis * Data * Peer review * Reasons for lack of uptake to date
by sennoma 2009-05-14 15:54 scholarlycommunication · openscience · publishing · publishing.models
http://mrkwr.wordpress.com/2009/05/14/web-2-0-and-scholarly-communication - cached - mail it - history
by sennoma 2009-04-30 19:30 openscience
http://www.bepress.com/cas/vol3/iss2/art5/ - cached - mail it - history
by sennoma 2009-04-28 03:15 openscience · oaos.examples · reproducibleresearch
http://www.reproducibleresearch.net/index.php/RR_links - cached - mail it - history
a recent report by Hefce (Higher Education Funding Council for England) which summarises the financial performance of English Universities, showed that a 22% increase in funding in IP protection (to over £20M) had led to a 1% increase in income. Note — income, not profit.
by sennoma 2009-04-02 17:06 intellectualproperty · open.everything · openscience
http://www.inkspotscience.com/blog/index.php/2009/04/02/walled-gardens/ - cached - mail it - history
The Brave New World of Science Publishing is the most comprehensive study of scientists’ use of social media ever undertaken. This report is designed to help publishers understand what scientists expect—and prefer—as Web 2.0 capabilities become the new industry standard.
by sennoma 2009-02-02 00:43 openscience · socialsoftware · social.science
http://www.researchandmarkets.com/research/0b3e4d/the_brave_new_worl - cached - mail it - history
a step on the way towards the global data graph.
by sennoma 2009-01-27 18:45 ELN · openscience
http://blog.openwetware.org/scienceintheopen/2009/01/27/the-integrated-lab-record-or-the-web-native-lab-notebook/ - cached - mail it - history
by sennoma 2009-01-25 23:49 bayh-dole · intellectualproperty · openscience
http://www.scidev.net/en/editorials/time-to-rethink-intellectual-property-laws-.html - cached - mail it - history
by sennoma 2009-01-25 15:49 webtools · openscience · opendata
http://www.biodas.org/wiki/Main_Page - cached - mail it - history
http://friendfeed.com/e/4ad4515b-fd30-4f9f-bf5c-6a1381692fdc/Comparison-of-biological-wikis/
by sennoma 2009-01-24 00:29 wiki · openscience · opendata · webtools
http://spreadsheets.google.com/ccc?key=pEEe7xKalAhYdf56DWRfcQg - cached - mail it - history
by sennoma 2009-01-24 00:21 openscience · authorID
http://efoundations.typepad.com/efoundations/2009/01/openids-researchers-and-delegation.html - cached - mail it - history
by sennoma 2009-01-19 22:48 semanticweb · openscience
http://www.sciam.com/article.cfm?id=semantic-web-in-actio&print=true - cached - mail it - history
by sennoma 2009-01-15 12:43 openscience
http://www.ctwatch.org/quarterly/articles/2007/08/web-20-in-science/ - cached - mail it - history
we have an evolved system for doing research that is not designed to be easily understood or modified. We need to take an experimental approach to identifying and solving specific problems that would let us increase the efficiency of the research process. Drew’s point was that this should be a proper research discipline in it’s own right, with the funding and respect that goes with it. For the presentation I summarised this as follows: Improving the research process is an area for (experimental) research that requires the same rigour, standards (and funding) as anything else that we do
by sennoma 2009-01-10 22:56 openscience
http://blog.openwetware.org/scienceintheopen/2009/01/08/reflections-on-the-open-science-workshop-at-psb09/ - cached - mail it - history
by sennoma 2009-01-10 16:58 opendata · openscience
http://www.data-archive.ac.uk/sharing/sharing.asp - cached - mail it - history
by sennoma 2009-01-05 20:11 openscience · PSB2009
http://nsaunders.wordpress.com/2009/01/06/uninspired-attend-psb-2009-virtually/ - cached - mail it - history
by sennoma 2009-01-04 13:07 openscience
http://blog.openwetware.org/deroure/?p=13 - cached - mail it - history
This is the Wikispace companion to SCIEnCE - Share Collaborative Ideas, Enact Cooperative Efforts. Scientific ideas are collaboratively composed using Wiki functionality. The result will be research designs that are optimized before funding and embarking on a project. Once a core group of contributors and proposals are accumulated, SCIEnCE will seek funding to reward the best contributors and projects.
by sennoma 2008-12-31 03:36 openscience
http://sharescienceideas.wikispaces.com/ - cached - mail it - history
by sennoma 2008-12-18 11:02 openscience
http://www.nature.com/msb/journal/v4/n1/full/msb200839.html - cached - mail it - history
by sennoma 2008-11-01 01:22 webtools · openscience
http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000204 - cached - mail it - history
by sennoma 2008-10-27 11:48 openscience
http://blog.openwetware.org/scienceintheopen/2008/10/26/a-personal-view-of-open-science-part-iv-policies-and-standards/ - cached - mail it - history
by sennoma 2008-10-19 22:27 blogs · openscience
http://methodologyphilosophyinfoscience.blogspot.com/search/label/science%202.0 - cached - mail it - history
by sennoma 2008-09-26 01:50 intellectualproperty · patents · openscience
http://www.readwriteweb.com/archives/patent_crisis_and_the_age_of_open_source_ideas.php - cached - mail it - history
a cooperative environment for the scientific research of trust metrics on social networks. This is the wiki, where we review and understand trust and its related issues. You can also find more information about research on trust metrics, and the researchers involved in this. For this we mostly use the Creative Commons Attribution license. We are also working on Python code, available under the GNU General Public License, to compare all proposed trust metrics on the same datasets. See Science Commons for more information about our mode of research.
by sennoma 2008-09-25 19:42 openscience
http://www.trustlet.org/wiki - cached - mail it - history
Results support a focus on work attributes in interpreting collaboration propensity. That is, cultural factors such as competition for individual recognition and concerns about intellectual property were not perceived as significant impediments to collaboration. Instead, characteristics like resource concentration and the need for coordination were more important in determining collaboration propensity. Implications of these findings include a call for more careful examination of the day-to-day work of scientists and engineers, and a suggestion that concerns about scientific competition impeding collaboration may be unwarranted.
by sennoma 2008-09-25 13:25 openscience · collaboration
http://dlist.sir.arizona.edu/1141/ - cached - mail it - history
The book offers commentary from notable experts in the field along with case studies of large-scale collaborative projects, past and ongoing. The projects described range from the development of a national virtual observatory for astronomical research to a National Institutes of Health funding program for major multilaboratory medical research; from the deployment of a cyberinfrastructure to connect experts in earthquake engineering to partnerships between developed and developing countries in AIDS research. The chapter authors speak frankly about the problems these projects encountered as well as the successes they achieved. The book strikes a useful balance between presenting the real stories of collaborations and developing a scientific approach to conceiving, designing, implementing, and evaluating such projects. It points to a future of scientific collaborations that build successfully on aspects from multiple disciplines.
by sennoma 2008-09-25 13:18 openscience
http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid=11603 - cached - mail it - history
by sennoma 2008-09-23 21:20 lostart · openscience · opendata
http://scienceblogs.com/ethicsandscience/2008/09/how_scientists_see_research_et.php - cached - mail it - history
by sennoma 2008-09-23 19:37 lostart · openscience · opendata
http://scienceblogs.com/ethicsandscience/2008/09/how_scientists_see_research_et_1.php - cached - mail it - history
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