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Bill Hooker, member since Jan 4, 2006
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Copy this Stefano’s Linotype » On Data Reconciliation Strategies and Their Impact on the Web of Data
by sennoma 2009-07-25 13:44 semanticweb · linked_data · stefanomazzocchi
http://www.betaversion.org/~stefano/linotype/news/304 - cached - mail it - history
Copy this STD-DOI Publication and Citation of Scientific Primary Data
Publication and Citation of Scientific Primary Data" (STD-DOI) is a project funded by the German Science Foundation. Its aim is to make primary scientific data citeable as publications. In this system, a data set would be attributed to its investigators as authors like it would be done for a work in the conventional scientific literature. Thus, scientific primary data should not exclusively understood as part of a scientific publication, but may have its own identity
by sennoma 2009-07-21 00:14 opendata · semanticweb
http://www.std-doi.de/front_content.php - cached - mail it - history
Copy this About | Science Collaboration Framework
The Science Collaboration Framework (SCF) is a software toolkit to establish web-based virtual team organizations for researchers in biomedicine. It enables researchers to publish and discuss on-line content such as articles, news, and perspectives, and to provide shared semantic context for this content using established scientific vocabularies and automated text mining.
by sennoma 2009-06-23 01:44 opendata · openscience · collaboration · semanticweb
http://sciencecollaboration.org - cached - mail it - history
Copy this What is the Semantic Web really all about? - Web Science - the World of the World Wide Web - James Hendler's blog on Nature Network
by sennoma 2009-06-17 06:17 semanticweb · jameshendler
http://network.nature.com/people/jhendler/blog/2009/06/16/what-is-the-semantic-web-really-all-about - cached - mail it - history
Copy this RDF, The Semantic Web, and Linked Data
RDF, The Semantic Web, and Linked Data This essay is an attempt to tie together my articles and blog posts on semantic web related topics. Bob DuCharme, last updated 22 May 2009
by sennoma 2009-05-28 12:57 linked_data · opendata · semanticweb · rdf
http://www.snee.com/rdf/semweboverview.html - cached - mail it - history
Copy this Biological knowledge management: the emerging role of the Semantic Web technologies -- Antezana et al., 10.1093/bib/bbp024 -- Briefings in Bioinformatics
New knowledge is produced at a continuously increasing speed, and the list of papers, databases and other knowledge sources that a researcher in the life sciences needs to cope with is actually turning into a problem rather than an asset. The adequate management of knowledge is therefore becoming fundamentally important for life scientists, especially if they work with approaches that thoroughly depend on knowledge integration, such as systems biology. Several initiatives to organize biological knowledge sources into a readily exploitable resourceome are presently being carried out. Ontologies and Semantic Web technologies revolutionize these efforts. Here, we review the benefits, trends, current possibilities, and the potential this holds for the biosciences.
by sennoma 2009-05-22 06:35 semanticweb
http://bib.oxfordjournals.org/cgi/content/abstract/bbp024v1 - cached - mail it - history
Copy this Marking up structured data - Webmasters/Site owners Help
microformats and RDF with Google = structured data on blogs; nice
by sennoma 2009-05-16 11:51 semanticweb · opendata · microformats · google
http://google.com/support/webmasters/bin/answer.py?hl=en&answer=99170 - cached - mail it - history
Copy this GoPubMed: Interview with Michael Alvers | Next Generation Science
by sennoma 2009-05-15 09:27 semanticweb · webtools · search · interviews · michaelalvers
http://www.nextgenerationscience.com/science-resources/gopubmed-interview-with-michael-alvers - cached - mail it - history
Copy this Advantages and Myths of RDF » AI3:::Adaptive Information
by sennoma 2009-04-22 14:48 semanticweb
http://www.mkbergman.com/?p=483 - cached - mail it - history
Copy this Social Networking, Semantic Searching and Science « Dennis’ Blog
by sennoma 2009-04-17 07:50 semanticweb
http://brainoids.wordpress.com/2009/04/12/social-networking-semantic-searching-and-science/ - cached - mail it - history
Copy this i9606: Dissertation now online
The full text of my dissertation, "Strategies for amassing, characterizing, and applying third-party metadata in bioinformatics", is now available via UBC's information repository. It is "manuscript-based" so each of the chapters except the introduction and the conclusion can be read and understood independently.
by sennoma 2009-04-15 22:07 semanticweb
http://i9606.blogspot.com/2009/04/dissertation-now-online.html - cached - mail it - history
Copy this National Centre for Text Mining — NaCTeM — Welcome !
The National Centre for Text Mining (NaCTeM) is the first publicly-funded text mining centre in the world. We provide text mining services in response to the requirements of the UK academic community. NaCTeM is operated by the University of Manchester with close collaboration with the University of Tokyo.
by sennoma 2009-04-01 00:25 semanticweb
http://www.nactem.ac.uk/index.php - cached - mail it - history
Copy this Workshop notes — SESL 2009 - biotext.org.uk
by sennoma 2009-04-01 00:24 semanticweb
http://biotext.org.uk/workshop-notes-sesl-2009/ - cached - mail it - history
Copy this Zzzoot: Semantic Web and Science Knowledge Integration
he January 2009 issue of IEEE Intelligent Systems is a special issue on the Semantic Web and science knowledge integration: * The Emerging Field of Semantic Scientific Knowledge Integration. McGuinness, Deborah L.; Fox, Peter; Brodaric, Boyan; Kendall, Elisa * Ontology Design for Scientific Theories That Make Probabilistic Predictions. Poole, D.; Smyth, C.; Sharma, R. * Semantic Support for Quantitative Research Processes. Rijgersberg, H.; Top, J.; Meinders, M. * MatSeek: An Ontology-Based Federated Search Interface for Materials Scientists. Cheung, Kwok; Hunter, Jane; Drennan, John * Annotation and Image Markup: Accessing and Interoperating with the Semantic Content in Medical Imaging. Rubin, Daniel L.; Mongkolwat, Pattanasak; Kleper, Vladimir; Supekar, Kaustubh; Channin, David S. * Enabling Cross-Disciplinary E-Science by Integrating Geoscience Ontologies with Dolce. Brodaric, B.; Probst, F.
by sennoma 2009-03-09 19:05 semanticweb
http://zzzoot.blogspot.com/2009/03/semantic-web-and-science-knowledge.html - cached - mail it - history
Copy this eFoundations: Metadata and microformats
by sennoma 2009-03-09 05:01 metadata · microformats · semanticweb
http://efoundations.typepad.com/efoundations/2008/08/metadata-and-mi.html - cached - mail it - history
Copy this The Semantic Web in Action: Scientific American
by sennoma 2009-01-19 22:48 semanticweb · openscience
http://www.sciam.com/article.cfm?id=semantic-web-in-actio&print=true - cached - mail it - history
Copy this How Will We Interact with the Web of Data?
by sennoma 2008-10-12 13:02 semanticweb
http://www.computer.org/portal/site/dsonline/menuitem.9ed3d9924aeb0dcd82ccc6716bbe36ec/index.jsp?&pName=dso_level1&path=... - cached - mail it - history
Copy this Main Page - SBML.org
by sennoma 2008-07-31 23:47 science · networks · semanticweb · markup
http://sbml.org/Main_Page - cached - mail it - history
Copy this Molecular Systems Biology
by sennoma 2008-07-06 01:23 semanticweb · collaboration
http://www.nature.com/msb/journal/v4/n1/full/msb200839.html;jsessionid=0CC00DE02E77A914FE8C038A4347E475 - cached - mail it - history
Copy this Linked Data | DBpedia.org
by sennoma 2008-06-23 10:46 opendata · semanticweb
http://dbpedia.org/page/Linked_Data - cached - mail it - history
Copy this BioLit Project
by sennoma 2008-06-22 12:47 semanticweb
http://biolit.ucsd.edu/doc/index.html - cached - mail it - history
Copy this Evidence-based web 2.0 - SLAIS534
by sennoma 2008-06-20 15:38 semanticweb · social.science
http://hlwiki.slais.ubc.ca/index.php?title=Evidence-based_web_2.0 - cached - mail it - history
Copy this ThoughtMesh: Tag your writing. Join the conversation.
ThoughtMesh is an unusual model for publishing and discovering scholarly papers online. It gives readers a tag-based navigation system that uses keywords to connect excerpts of essays published on different Web sites.
by sennoma 2008-05-31 22:47 webtools · oa · semanticweb
http://thoughtmesh.net/ - cached - mail it - history
Copy this Semantic Web Case Studies and Use Cases
by sennoma 2008-05-30 16:32 semanticweb · openscience
http://www.w3.org/2001/sw/sweo/public/UseCases/ - cached - mail it - history
Copy this On "Semantic", "Semantic Web", and "Linked Data Web"
by sennoma 2008-05-18 13:13 semanticweb
http://www.openlinksw.com/blog/~kidehen/?id=1360 - cached - mail it - history
Copy this The Open Biomedical Ontologies
The OBO Foundry is a collaborative experiment involving developers of science-based ontologies who are establishing a set of principles for ontology development with the goal of creating a suite of orthogonal interoperable reference ontologies in the biomedical domain. The groups developing ontologies who have expressed an interest in this goal are listed below, followed by other relevant efforts in this domain. In addition to a listing of OBO ontologies, this site also provides a statement of the OBO Foundry principles, discussion fora, technical infrastructure, and other services to facilitate ontology development. We welcome feedback and encourage participation.
by sennoma 2008-05-17 02:17 openstandards · semanticweb
http://www.obofoundry.org/ - cached - mail it - history
Copy this HubLog: Semgine's myMap for exploring semantic networks of information
by sennoma 2008-04-07 00:46 webtools · semanticweb · textmining · opendata
http://hublog.hubmed.org/archives/001647.html - cached - mail it - history
Copy this TechnicaLee Speaking: Scientific American: "The Semantic Web in Action"
by sennoma 2008-02-12 01:45 semanticweb
http://thefigtrees.net/lee/blog/2007/12/scientific_american_the_semant.html - cached - mail it - history
Copy this Nodalities
overview of semantic web ideas see also followup post/s
by sennoma 2007-09-20 13:26 openscience · semanticweb
http://blogs.talis.com/nodalities/2007/09/the_semantic_web_is_everyone_c.php - cached - mail it - history
Copy this i9606: Draft of E.D. manuscript number 1
1. I'm curious to see how any comments I might receive here correspond to comments from official reviewers. Furthermore I'm curious to have any comments on this work, period. 2. I'm still trying to figure out how blogging might fit into the academic publishing landscape so I'm running experiments on myself. 3. I've been ridiculed (in an insightful and good natured way) for publishing content in a journal that others thought should have remained in blog form only. So I decided that from now on, if possible, I will publish everything I do via blog - as well as through traditional channels.
by sennoma 2007-09-11 10:43 oaos.examples · semanticweb · scienceblogging
http://i9606.blogspot.com/2007/09/draft-of-ed-manuscript-number-1.html - cached - mail it - history
Copy this Ontology meet Folksonomy, the entity describer. - Connotea: Latest News and Blog - Ian Mulvany's blog on Nature Network
by sennoma 2007-08-31 15:27 semanticweb · openscience · controlledvocab
http://network.nature.com/blogs/user/U3DF456C6/2007/08/31/ontology-meet-folksonomy-the-entity-describer - cached - mail it - history
Copy this Nautilus: Automated structured abstracts
by sennoma 2007-07-17 11:20 opendata · semanticweb
http://blogs.nature.com/nautilus/2007/07/post_6.html - cached - mail it - history
Copy this bioGUID
bioguid.info is an attempt to bootstrap the biodiversity Semantic Web by providing resolvable URIs for biological objects, such as publications, taxonomic names, nucleotide sequences, and specimens. These URIs (or "GUIDs") can be resolved by a web browser to display HTML, but under the hood are resolved to RDF (which you can see by viewing the source of the web page you get for a URI). Resolvable URIs that yield RDF which can be aggregated and queried is the basic vision of the Semantic Web. The vision is compelling, yet biodiversity informatics is some way from achieving it. One major obstacle is the lack of resolvable URIs for biological objects -- which bioguid.info seeks to remedy. bioguid.info supports DOIs and PubMed identifiers for publications, Handles (presently limited to those served by the AMNH and Ohio State University), GenBank sequences identified by their GI number, and specimens from AntWeb, Field Museum of Natural History, and Royal Ontario Museum. More sources are being added. Links between objects are also being added, the goal being that given, say, a PubMed identifier, you can go to the sequences referenced by that publication, and then to voucher specimens for those sequences.
by sennoma 2007-03-22 10:53 openscience · semanticweb
http://bioguid.info/ - cached - mail it - history
Copy this Web Science
The Web Science Research Initiative (WSRI) is a joint endeavour between the Computer Science and Artificial Intelligence Laboratory (CSAIL) at MIT and the School of Electronics and Computer Science (ECS) at the University of Southampton. The goal of WSRI is to facilitate and produce the fundamental scientific advances necessary to inform the future design and use of the World Wide Web.
by sennoma 2006-11-13 15:54 openscience · opendata · semanticweb
http://www.webscience.org/ - cached - mail it - history
Copy this August 2009: How Google beat Amazon and Ebay to the Semantic Web (Ftrain.com)
by sennoma 2006-11-13 14:41 openscience · opendata · semanticweb
http://ftrain.com/google_takes_all.html - cached - mail it - history
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